Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs114394199 chr5:71008102 C/T 2.44E-8 490 32.4 25.53 17.68 KM Plot
PRAD rs114398971 chr5:154197674 C/T 0 492 29.97 37.43 4.87 KM Plot
PRAD rs114419739 chr3:125722490 C/T 0.000177 472 29.18 36.63 20.03 KM Plot
PRAD rs114424244 chr4:187811453 C/T 2.06E-6 483 31.13 28.57 26.8 KM Plot
PRAD rs114481659 chr11:6946631 T/A 5.18E-8 492 31.12 29.97 28.57 KM Plot
PRAD rs114498182 chr2:47151037 A/G 4.81E-6 490 30.78 35.57 36.93 KM Plot
PRAD rs114517195 chr5:154136902 C/T 0 490 29.8 35.57 4.87 KM Plot
PRAD rs114522709 chr1:93695922 G/A 3.62E-6 494 31.3 28.13 18.97 KM Plot
PRAD rs114620978 chr5:154233471 C/T 0 493 29.63 38.33 4.87 KM Plot
PRAD rs11465702 chr2:103057892 A/G 5.13E-7 487 32 29 25.32 KM Plot
PRAD rs11465723 chr2:103063520 G/A 5.13E-7 487 32 29 25.32 KM Plot
PRAD rs114671126 chr2:47165628 A/G 3.1E-6 492 30.8 32.4 36.77 KM Plot
PRAD rs114738709 chr3:14003817 G/T 0.000152 492 30.78 31.38 21.58 KM Plot
PRAD rs114791025 chr4:187810734 C/T 1.9E-6 485 31.23 28.57 26.8 KM Plot
PRAD rs114850423 chr4:187811621 A/G 2.06E-6 483 31.13 28.57 26.8 KM Plot